Description

ASSEMJAC Assemble monolithic Jacobian matrix.

[ J, T_J, T_SP ] = ASSEMJAC( PROB, U, METHOD, SOLCOMP, DPERT, I_CUB, F_SPARSE )

Called from assemblenjac to assemble a monolithic Jacobian matrix J.

The METHOD flag indicates computing the Jacobian J = d(K(U)*U-f(U))/dU with respect to the solution and linearization point U (METHOD=0), where each column J_i is computed as

J_i = ( (K(U_i+DPERT)*(U_i+DPERT)-f(U_i+DPERT)) - (K(U)*U-f(U)) )/DPERT

or alternatively a coordinate direction (METHOD=j), Jj = d(K(U,xj)*U-f(U,xj))/dxj where

J_i = ( (K(U,xj+DPERT)*(U,xj+DPERT)-f(U,xj+DPERT)) - (K(U,x)*U-f(U,xj)) )/DPERT

The optional input argument SOLCOMP can for (METHOD=0) be specified as a 2 x n (cell) array indicating which row and column (dependent variable) combinations should be computed and returned. The first column corresponds to the row and second column for the blocks. SOLCOMP can also equivalently be prescribed as a cell array of pairwise dependent variable name strings. For (METHOD=1/2/3) SOLCOMP can be a single vector to specify the blocks/dependent variable to compute and return. If SOLCOMP is not prescribed or empty all blocks and dependent variable will be computed.

Input       Value/{Default}        Description
-----------------------------------------------------------------------------------
prob        struct                 Problem definition struct
u           vector [n_u,1]         Solution vector/linearization point, size(n_u,1)
method      scalar {0/i_sdim}      Jacobian computation type
                                       0 - Jacobian with respect to solution
                                   1/2/3 - Jacobian with respect to direction
solcomp     {all dvars/subd}       Dependent variables/subdomains to assemble for
dpert       scalar/{1e-8}          Perturbation parameter
icub        scalar/{2}             Numerical integration rule
f_sparse    logical/{true}         Return sparse/struct matrix format
                                                                                  .
Output      Value                  Description
-----------------------------------------------------------------------------------
J           sparse/triplet         Assembled Jacobian matrix (size(n_u,n_u))
t_j         scalar                 Time spent assembling Jacobian matrix
t_sp        scalar                 Time for sparse matrix conversion

See also: assemblenjac, assemblej