FEATool Multiphysics  v1.14
Finite Element Analysis Toolbox
impexp_hdf5.m File Reference

Description

IMPEXP_HDF5 Import/export grid FEniCS HDF5 format.

[ GRID ] = IMPEXP_HDF5( FILE_NAME, MODE, DATA, FID ) Import or export a FEniCS grid in hdf5 format. FILE_NAME is a string specifying the file to process. MODE can be a string indicating IMPORT (using automatic boundary reconstruction with gridbdr) which returns a FEATool grid struct. If mode is EXPORT, the grid or corresponding fea problem struct to export must be given in DATA. FID is an optional log file handle for message output (negative for gui output or empty for no output).

The following hdf5 datasets/fields are read/written
   dataset                  grid entry       size/type
   -------------------------------------------------------------
   /mesh/cell_indices       0:n_c-1          n_c/int64
   /mesh/coordinates        grid.p           [n_sdim,n_p]/double
   /mesh/topology           sort(grid.c)-1   [n_v,n_c]/int64
   /mesh/values             grid.s-1         n_c/uint64

   /boundary/coordinates    grid.p           [n_sdim,n_p]/double
   /boundary/topology       gridedge/face    [n_ef,n_c]/int64
   /boundary/values         grid.b(3,:)      n_b/uint64

   /edge/coordinates        grid.p           [3,n_p]/double
   /edge/topology           gridbdre         [2,n_c]/int64
   /edge/values             be(5,:)          n_e/uint64
   (only exported if DATA contains an .edg field)
Example
  1) Export and re-import of a unit circle grid.

  grid1 = quad2tri(circgrid());
  impexp_hdf5( 'featool-fenics-mesh.h5', 'export', grid1 )
  grid2 = impexp_hdf5( 'featool-fenics-mesh.h5', 'import' )
  subplot(1,2,1), plotgrid(grid1), title('grid1')
  subplot(1,2,2), plotgrid(grid2), title('grid2')
  is_ok = gridcheck(grid2) == 0
See also
fenics, fenics_import, impexp_dolfin